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Crystal Structure of H5 (tyTy) Influenza Virus Haemagglutinin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BIS-TRIS PROPANE PH 7.5, 0.05 - 0.15 M K/NAPO4 (PH 7.0), 15-18% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.13 60.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.482 α = 90 b = 228.492 β = 113.88 c = 71.324 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2012-03-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 114.2 100 0.09 10 3.5 57647 2.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.82 100 0.68 2.1 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.68 114.25 54721 2926 99.98 0.21544 0.21388 0.2147 0.24392 0.2438 RANDOM 95.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.94 -1.05 6.89 -3.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.341 r_dihedral_angle_4_deg 18.373 r_dihedral_angle_3_deg 14.914 r_dihedral_angle_1_deg 5.126 r_mcangle_it 1.5 r_scbond_it 1.094 r_angle_refined_deg 1.042 r_mcbond_it 0.86 r_mcbond_other 0.86 r_angle_other_deg 0.781
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.341 r_dihedral_angle_4_deg 18.373 r_dihedral_angle_3_deg 14.914 r_dihedral_angle_1_deg 5.126 r_mcangle_it 1.5 r_scbond_it 1.094 r_angle_refined_deg 1.042 r_mcbond_it 0.86 r_mcbond_other 0.86 r_angle_other_deg 0.781 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11016 Nucleic Acid Atoms Solvent Atoms 398 Heterogen Atoms 76
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing