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Satellite Tobacco Necrosis Virus (STNV) virus like particle in complex with the B3 aptamer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 pH 6.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 315.02 α = 90 b = 300.55 β = 94.37 c = 183.51 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.29 217 99.6 0.08 9.3 5.5 756410
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.29 2.35 99.2 0.39 3.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT NONE 2.29 217.15 718474 37936 99.58 0.15729 0.15512 0.2007 0.19821 0.2018 RANDOM 18.402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.07 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.017 r_dihedral_angle_3_deg 14.796 r_dihedral_angle_1_deg 7.294 r_scangle_it 5.082 r_scbond_it 3.327 r_angle_refined_deg 1.756 r_mcangle_it 1.714 r_mcbond_it 0.96 r_bond_refined_d 0.023 r_bond_other_d
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.017 r_dihedral_angle_3_deg 14.796 r_dihedral_angle_1_deg 7.294 r_scangle_it 5.082 r_scbond_it 3.327 r_angle_refined_deg 1.756 r_mcangle_it 1.714 r_mcbond_it 0.96 r_bond_refined_d 0.023 r_bond_other_d r_angle_other_deg r_dihedral_angle_4_deg r_chiral_restr r_gen_planes_refined r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1457 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling