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CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC1-2 AND PROTOCADHERIN-15 EC1- 2, FORM I 2.2A.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WHV PDB ENTRY 2WHV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 0.1 M MES PH 6.5, 15% W/V PEG550MME, 25% GLYCEROL, 0.2M POTASSIUM CHLORIDE
Crystal Properties Matthews coefficient Solvent content 2.94 58.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 173.649 α = 90 b = 40.468 β = 102.92 c = 85.187 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD E. WESTBROOK NOIR-1 MBC SYSTEM 2010-12-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.23 50 96.2 0.11 10.65 3.4 27442 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.23 2.27 87.5 0.39 2.69 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WHV 2.23 41.08 25940 1394 95.73 0.17777 0.17459 0.1729 0.23634 0.2317 RANDOM 23.536
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 0.23 -0.18 0.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.562 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 13.969 r_dihedral_angle_1_deg 6.787 r_scangle_it 5.181 r_scbond_it 3.197 r_mcangle_it 1.983 r_angle_refined_deg 1.54 r_mcbond_it 1.075 r_angle_other_deg 0.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.562 r_dihedral_angle_4_deg 17.865 r_dihedral_angle_3_deg 13.969 r_dihedral_angle_1_deg 6.787 r_scangle_it 5.181 r_scbond_it 3.197 r_mcangle_it 1.983 r_angle_refined_deg 1.54 r_mcbond_it 1.075 r_angle_other_deg 0.873 r_mcbond_other 0.288 r_chiral_restr 0.107 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3501 Nucleic Acid Atoms Solvent Atoms 348 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing