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Cyclometalated Phthalimides as Protein Kinase Inhibitors
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3BWF PDB ENTRY 3BWF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 200 MM SODIUM CITRATE, 100 MM HEPES, 30 % MPD, PH 7.5
Crystal Properties Matthews coefficient Solvent content 3.37 63.49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.2 α = 90 b = 99.2 β = 90 c = 80.6 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD PT COATED MIRRORS IN A KIRKPATRICK-BAEZ (KB) GEOMETRY 2011-06-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 25 99.8 0.13 16.62 6.4 20098 -3 28.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 100 0.52 4.81 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3BWF 2.3 24.8 19383 711 99.9 0.17176 0.1706 0.1773 0.20127 0.2073 RANDOM 23.991
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.05 0.53 1.05 -1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.199 r_dihedral_angle_4_deg 17.674 r_dihedral_angle_3_deg 12.834 r_dihedral_angle_1_deg 5.828 r_scangle_it 3.61 r_scbond_it 2.117 r_mcangle_it 1.55 r_angle_refined_deg 1.442 r_angle_other_deg 0.845 r_mcbond_it 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.199 r_dihedral_angle_4_deg 17.674 r_dihedral_angle_3_deg 12.834 r_dihedral_angle_1_deg 5.828 r_scangle_it 3.61 r_scbond_it 2.117 r_mcangle_it 1.55 r_angle_refined_deg 1.442 r_angle_other_deg 0.845 r_mcbond_it 0.79 r_mcbond_other 0.121 r_chiral_restr 0.077 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2200 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing