X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BR7PDB ENTRY 2BR7

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
170.6-1.2 M AMMONIUM SULPHATE, 0.1 M MMT PH 6.5-8.5
Crystal Properties
Matthews coefficientSolvent content
3.1861.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 207.299α = 90
b = 207.299β = 90
c = 207.299γ = 90
Symmetry
Space GroupI 2 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6MMIRRORS2009-09-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.248.8694.30.17.82.424519
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.3797.30.92.42.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2BR73.2146.5821810117893.640.197660.196850.21294RANDOM119.044
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.831
r_dihedral_angle_3_deg15.676
r_dihedral_angle_4_deg13.998
r_dihedral_angle_1_deg6.086
r_angle_refined_deg1.136
r_angle_other_deg1.08
r_symmetry_vdw_refined0.306
r_symmetry_vdw_other0.228
r_nbd_refined0.202
r_nbd_other0.184
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.831
r_dihedral_angle_3_deg15.676
r_dihedral_angle_4_deg13.998
r_dihedral_angle_1_deg6.086
r_angle_refined_deg1.136
r_angle_other_deg1.08
r_symmetry_vdw_refined0.306
r_symmetry_vdw_other0.228
r_nbd_refined0.202
r_nbd_other0.184
r_nbtor_refined0.184
r_xyhbond_nbd_refined0.134
r_xyhbond_nbd_other0.112
r_nbtor_other0.082
r_chiral_restr0.061
r_symmetry_hbond_refined0.053
r_bond_refined_d0.005
r_gen_planes_refined0.005
r_bond_other_d0.003
r_gen_planes_other0.002
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_mcangle_other
r_scbond_it
r_scbond_other
r_scangle_it
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8213
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms80

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
SCALAdata scaling
PHASERphasing