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Aplysia californica AChBP in complex with Varenicline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BR7 PDB ENTRY 2BR7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 0.6-1.2 M AMMONIUM SULPHATE, 0.1 M MMT PH 6.5-8.5
Crystal Properties Matthews coefficient Solvent content 3.18 61.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.299 α = 90 b = 207.299 β = 90 c = 207.299 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M MIRRORS 2009-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.2 48.86 94.3 0.1 7.8 2.4 24519
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.2 3.37 97.3 0.9 2.4 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BR7 3.2 146.58 21810 1178 93.64 0.19766 0.19685 0.2026 0.21294 0.2196 RANDOM 119.044
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.831 r_dihedral_angle_3_deg 15.676 r_dihedral_angle_4_deg 13.998 r_dihedral_angle_1_deg 6.086 r_angle_refined_deg 1.136 r_angle_other_deg 1.08 r_symmetry_vdw_refined 0.306 r_symmetry_vdw_other 0.228 r_nbd_refined 0.202 r_nbd_other 0.184
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.831 r_dihedral_angle_3_deg 15.676 r_dihedral_angle_4_deg 13.998 r_dihedral_angle_1_deg 6.086 r_angle_refined_deg 1.136 r_angle_other_deg 1.08 r_symmetry_vdw_refined 0.306 r_symmetry_vdw_other 0.228 r_nbd_refined 0.202 r_nbd_other 0.184 r_nbtor_refined 0.184 r_xyhbond_nbd_refined 0.134 r_xyhbond_nbd_other 0.112 r_nbtor_other 0.082 r_chiral_restr 0.061 r_symmetry_hbond_refined 0.053 r_bond_refined_d 0.005 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8213 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 80
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing