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The structure of a fungal endo-beta-N-acetylglucosaminidase from glycosyl hydrolase family 18, at 1.3A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5 AS DESCRIBED IN PUBLICATION, pH 5
Crystal Properties Matthews coefficient Solvent content 1.97 37.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.438 α = 90 b = 63.874 β = 100.97 c = 59.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2008-04-09 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 19.42 99.2 0.07 12.3 3.9 63365 5.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 95.6 0.2 5.5 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT NONE 1.3 20 60140 3206 99.48 0.18473 0.18383 0.1825 0.20179 0.1994 RANDOM 10.531
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.01 -0.15 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_dihedral_angle_4_deg 17.739 r_dihedral_angle_3_deg 10.892 r_dihedral_angle_1_deg 6.157 r_scangle_it 2.156 r_scbond_it 1.42 r_angle_refined_deg 1.24 r_mcangle_it 0.963 r_mcbond_it 0.547 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.787 r_dihedral_angle_4_deg 17.739 r_dihedral_angle_3_deg 10.892 r_dihedral_angle_1_deg 6.157 r_scangle_it 2.156 r_scbond_it 1.42 r_angle_refined_deg 1.24 r_mcangle_it 0.963 r_mcbond_it 0.547 r_chiral_restr 0.084 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2181 Nucleic Acid Atoms Solvent Atoms 434 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing