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Crystal structure of the type 2 secretion system pilotin from Klebsiella Oxytoca
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 100 MM HEPES PH 7.5, 75% MPD
Crystal Properties Matthews coefficient Solvent content 2.11 41.83
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.507 α = 90 b = 46.896 β = 90 c = 109.686 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 230 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.24 4 97.4 0.02 0.05 52 21 47490 2 15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.24 54.84 23774 1276 97.92 0.17406 0.17322 0.1844 0.18975 0.2029 RANDOM 17.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.08 0.13 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.219 r_dihedral_angle_4_deg 18.591 r_dihedral_angle_3_deg 12.173 r_scangle_it 4.163 r_dihedral_angle_1_deg 4.027 r_scbond_it 2.558 r_mcangle_it 1.668 r_angle_refined_deg 1.529 r_mcbond_it 0.886 r_chiral_restr 0.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.219 r_dihedral_angle_4_deg 18.591 r_dihedral_angle_3_deg 12.173 r_scangle_it 4.163 r_dihedral_angle_1_deg 4.027 r_scbond_it 2.558 r_mcangle_it 1.668 r_angle_refined_deg 1.529 r_mcbond_it 0.886 r_chiral_restr 0.082 r_bond_refined_d 0.015 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 717 Nucleic Acid Atoms Solvent Atoms 83 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling autoSHARP phasing