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Crystal structure of human kinesin Eg5 in complex with 1-(3-(((2-Aminoethyl)thio)diphenylmethyl)phenyl)ethanone hydrochloride
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X88 PDB ENTRY 1X88
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.8 22 % POLYETHYLENE GLYCOL-3350, 0.25 M AMMONIUM SULPHATE, 0.1 M POTASSIUM SODIUM TARTRATE TETRAHYDRATE AND 0.1 M MES PH 5.8
Crystal Properties Matthews coefficient Solvent content 3.37 63.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 145.84 α = 90 b = 156.4 β = 90 c = 170.16 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 315r 2011-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 30 97.7 0.09 13 5.4 98930 2 58.62
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.9 96.6 0.58 2.7 5.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1X88 2.75 29.991 1.35 98753 4934 97.36 0.2237 0.2206 0.2099 0.2804 0.2671 65.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 19.8869 -9.2658 -10.6211
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.742 f_angle_d 1.699 f_chiral_restr 0.117 f_bond_d 0.013 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17555 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 397
Software Software Software Name Purpose PHENIX refinement iMOSFLM data reduction SCALA data scaling PHASER phasing