Experiment: 44OO

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6RHF

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	2.0 M Ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
2.34	47.51

Symmetry
Space Group	P 21 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X 16M		2025-04-12	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SSRF BEAMLINE BL17UM	0.97919	SSRF	BL17UM

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.274	55.176	91.9	0.131	0.139	0.046	0.999	10.4	8.4		42328

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.274	1.413	54.8		1.033	1.147	0.486	0.649	1.7	4.9

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.274	55.176	42327	2128	68.354	0.175	0.1736	0.1828	0.2027	0.2064	11.271

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.003			-0.003		0.005

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.961
r_dihedral_angle_3_deg	10.939
r_dihedral_angle_1_deg	7.949
r_dihedral_angle_2_deg	5.492
r_lrange_it	4.132
r_lrange_other	4.131
r_scangle_it	2.813
r_scangle_other	2.812
r_mcangle_it	1.936
r_mcangle_other	1.936

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	14.961
r_dihedral_angle_3_deg	10.939
r_dihedral_angle_1_deg	7.949
r_dihedral_angle_2_deg	5.492
r_lrange_it	4.132
r_lrange_other	4.131
r_scangle_it	2.813
r_scangle_other	2.812
r_mcangle_it	1.936
r_mcangle_other	1.936
r_scbond_it	1.907
r_scbond_other	1.906
r_angle_refined_deg	1.372
r_mcbond_it	1.29
r_mcbond_other	1.279
r_angle_other_deg	0.702
r_nbd_refined	0.23
r_symmetry_nbd_other	0.213
r_nbtor_refined	0.179
r_xyhbond_nbd_refined	0.153
r_nbd_other	0.153
r_symmetry_xyhbond_nbd_refined	0.103
r_symmetry_nbtor_other	0.084
r_chiral_restr	0.081
r_symmetry_nbd_refined	0.045
r_gen_planes_refined	0.012
r_bond_refined_d	0.008
r_bond_other_d	0.004
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1600
Nucleic Acid Atoms
Solvent Atoms	161
Heterogen Atoms	88

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

44OO | pdb_000044oo