Find PDB structures and Computed Structure Models (CSM) by combining queries from tools in this suite: Attribute Search, Sequence Similarity, Sequence Motif, 3D Similarity, and 3D Motif with 'AND' logic.
Gold-standard half maps were generated in cryoSPARC v4.7.1 during final non-uniform refinement from independently refined half-datasets.
Refinement Type
Symmetry Type
POINT
Point Symmetry
D3
Map-Model Fitting and Refinement
Id
1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector Type
TFS FALCON 4i (4k x 4k)
Electron Dose (electrons/Å**2)
50
Imaging Experiment
1
Date of Experiment
Temperature (Kelvin)
Microscope Model
TFS KRIOS
Minimum Defocus (nm)
1750
Maximum Defocus (nm)
2750
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS
2.7
Imaging Mode
BRIGHT FIELD
Specimen Holder Model
FEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification
Calibrated Magnification
Source
FIELD EMISSION GUN
Acceleration Voltage (kV)
300
Imaging Details
EM Software
Task
Software Package
Version
PARTICLE SELECTION
cryoSPARC
4.7.1
MODEL REFINEMENT
PHENIX
1.21.2_5419
CTF CORRECTION
cryoSPARC
4.7.1
INITIAL EULER ASSIGNMENT
cryoSPARC
4.7.1
FINAL EULER ASSIGNMENT
cryoSPARC
4.7.1
CLASSIFICATION
cryoSPARC
4.7.1
RECONSTRUCTION
cryoSPARC
4.7.1
Image Processing
CTF Correction Type
CTF Correction Details
Number of Particles Selected
Particle Selection Details
PHASE FLIPPING AND AMPLITUDE CORRECTION
3129209
Initial particles were selected using blob picking. Templates generated from 2D class averages were subsequently used for template-based particle picking in cryoSPARC