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STRUCTURE OF A PROBABLE AROMATIC ACID DECARBOXYLASE
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SBZ PDB ENTRY 1SBZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 1.2 M AMMONIUM SULFATE, 200 MM NACL, AND 100 MM CACODYLATE AT PH 6.3
Crystal Properties Matthews coefficient Solvent content 2.37 48.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 141.77 α = 90 b = 141.77 β = 90 c = 141.77 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 81.85 99.9 0.07 4.4 35844 2 21.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.58 100 0.49 2.8 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SBZ 1.5 81.85 35844 1885 99.89 0.17258 0.17139 0.1695 0.19493 0.194 RANDOM 15.291
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.597 r_dihedral_angle_4_deg 15.715 r_dihedral_angle_3_deg 12.581 r_dihedral_angle_1_deg 6.187 r_scangle_it 4.551 r_scbond_it 2.839 r_angle_refined_deg 1.928 r_mcangle_it 1.838 r_mcbond_it 1.135 r_chiral_restr 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.597 r_dihedral_angle_4_deg 15.715 r_dihedral_angle_3_deg 12.581 r_dihedral_angle_1_deg 6.187 r_scangle_it 4.551 r_scbond_it 2.839 r_angle_refined_deg 1.928 r_mcangle_it 1.838 r_mcbond_it 1.135 r_chiral_restr 0.142 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1546 Nucleic Acid Atoms Solvent Atoms 140 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing