X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1Hanging Drop Vapor Diffusion72930.1M Tris-HCl, 30% Ethylene glycol(in case of Se-Met derivative, 25%), 5% polyethylene glycol, pH 7.0, Hanging Drop Vapor Diffusion, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3647.78

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 134.56α = 90
b = 50.403β = 102.92
c = 76.35γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC Quantum 270rmirrors2009-01-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE BL-17A1.00000Photon FactoryBL-17A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7544.5900.04814.13.84538945389-4
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.840.4852.23.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.753643029230089.60.18470.182170.23119RANDOM45.467
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.66-1.82.35-1.15
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.783
r_dihedral_angle_4_deg24.383
r_dihedral_angle_3_deg16.147
r_dihedral_angle_1_deg6.978
r_mcangle_it4.149
r_scbond_it3.854
r_mcbond_it2.988
r_angle_refined_deg2.28
r_chiral_restr0.181
r_bond_refined_d0.024
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.783
r_dihedral_angle_4_deg24.383
r_dihedral_angle_3_deg16.147
r_dihedral_angle_1_deg6.978
r_mcangle_it4.149
r_scbond_it3.854
r_mcbond_it2.988
r_angle_refined_deg2.28
r_chiral_restr0.181
r_bond_refined_d0.024
r_gen_planes_refined0.012
r_gen_planes_other0.001
r_bond_other_d
r_angle_other_deg
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3318
Nucleic Acid Atoms
Solvent Atoms267
Heterogen Atoms8

Software

Software
Software NamePurpose
SOLVEphasing
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling