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KIR3DL1 in complex with HLA-B*5701
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RFX PDB ENTRIES 2RFX and 1IM9 experimental model PDB 1IM9 PDB ENTRIES 2RFX and 1IM9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.6 294 16% PEG 3350, 2% tacsimate pH 5.0, 0.1M tri-sodium citrate pH 5.6., VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.48 50.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.248 α = 100.56 b = 66.374 β = 92.83 c = 93.361 γ = 101.56
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2011-02-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9536 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 94.6 0.257 20.8 3.7 136837 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.84 87.8 0.257 3 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRIES 2RFX and 1IM9 1.8 35.85 1.97 129993 6931 96.76 0.2126 0.2112 0.211 0.2373 0.237 random 29.231
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 -0.03 -0.07 -0.08 -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.302 r_dihedral_angle_4_deg 17.119 r_dihedral_angle_3_deg 13.201 r_dihedral_angle_1_deg 6.009 r_scangle_it 4.006 r_mcangle_it 3.028 r_scbond_it 2.805 r_mcbond_it 2.219 r_angle_refined_deg 1.221 r_chiral_restr 0.088
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.302 r_dihedral_angle_4_deg 17.119 r_dihedral_angle_3_deg 13.201 r_dihedral_angle_1_deg 6.009 r_scangle_it 4.006 r_mcangle_it 3.028 r_scbond_it 2.805 r_mcbond_it 2.219 r_angle_refined_deg 1.221 r_chiral_restr 0.088 r_bond_refined_d 0.009 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10553 Nucleic Acid Atoms Solvent Atoms 1586 Heterogen Atoms 84
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling