X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1inhibitor soak7.529319-30% PEG3350, 0.1MHepes, pH 7.5, 0.2M MgCl2, inhibitor soak, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2244.71

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 143.178α = 90
b = 55.629β = 100.37
c = 51.216γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944mirrors2010-11-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU FR-E+ SUPERBRIGHT1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6351.73990.20.02718.62.644473444732
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.631.7275.20.1670.1674.71.85371

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.6351.73944463224689.810.17360.17250.1942RANDOM14.3049
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.06-0.11-0.020.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.51
r_dihedral_angle_4_deg13.222
r_dihedral_angle_3_deg10.78
r_dihedral_angle_1_deg4.847
r_scangle_it1.947
r_scbond_it1.113
r_angle_refined_deg0.894
r_angle_other_deg0.724
r_mcangle_it0.588
r_mcbond_it0.287
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.51
r_dihedral_angle_4_deg13.222
r_dihedral_angle_3_deg10.78
r_dihedral_angle_1_deg4.847
r_scangle_it1.947
r_scbond_it1.113
r_angle_refined_deg0.894
r_angle_other_deg0.724
r_mcangle_it0.588
r_mcbond_it0.287
r_chiral_restr0.057
r_mcbond_other0.047
r_bond_refined_d0.005
r_gen_planes_refined0.002
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3058
Nucleic Acid Atoms
Solvent Atoms395
Heterogen Atoms57

Software

Software
Software NamePurpose
SCALAdata scaling
AMoREphasing
REFMACrefinement
PDB_EXTRACTdata extraction
JDirectordata collection
XSCALEdata scaling