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Structure of Engineered Single Domain ICAM-1 D1 with High-Affinity aL Integrin I Domain of Native C-Terminal Helix Conformation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6 277 pH 6.0, EVAPORATION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.1 60.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.041 α = 90 b = 166.334 β = 90 c = 299.372 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2009-10-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 50 58846
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.6 49.54 55823 2984 96.07 0.21845 0.21762 0.2104 0.23356 0.2272 RANDOM 165.66
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.41 -0.01 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.143 r_dihedral_angle_3_deg 20.497 r_dihedral_angle_4_deg 10.878 r_dihedral_angle_1_deg 6.957 r_scangle_it 1.659 r_angle_refined_deg 1.418 r_scbond_it 0.922 r_mcangle_it 0.643 r_mcbond_it 0.316 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.143 r_dihedral_angle_3_deg 20.497 r_dihedral_angle_4_deg 10.878 r_dihedral_angle_1_deg 6.957 r_scangle_it 1.659 r_angle_refined_deg 1.418 r_scbond_it 0.922 r_mcangle_it 0.643 r_mcbond_it 0.316 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 29316 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 14
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling