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Crystal structure of monobody 7c12/abl1 sh2 domain complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OPK 1OPK: 154-235, 1FNF: LOOPS OMITTED experimental model PDB 1FNF 1OPK: 154-235, 1FNF: LOOPS OMITTED
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.2M MG(NO3)2, 100MM LICL, 20% PEG 3350, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292K, pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.09 41.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.336 α = 90 b = 49.396 β = 90 c = 107.354 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2010-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 30 99.2 0.133 11.8 5.2 12700 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 99.3 2.4 5.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1OPK: 154-235, 1FNF: LOOPS OMITTED 2.1 30 2 11957 617 98.1 0.193 0.19 0.1926 0.251 0.2552 RANDOM 24.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.56 -0.85 -0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.37 r_dihedral_angle_4_deg 17.743 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_1_deg 6.71 r_scangle_it 3.738 r_scbond_it 2.283 r_mcangle_it 1.824 r_angle_refined_deg 1.378 r_mcbond_it 0.985 r_chiral_restr 0.093
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.37 r_dihedral_angle_4_deg 17.743 r_dihedral_angle_3_deg 15.008 r_dihedral_angle_1_deg 6.71 r_scangle_it 3.738 r_scbond_it 2.283 r_mcangle_it 1.824 r_angle_refined_deg 1.378 r_mcbond_it 0.985 r_chiral_restr 0.093 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1580 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 29
Software Software Software Name Purpose PHASER phasing REFMAC refinement DENZO data reduction SCALEPACK data scaling