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Crystal structure of a putative triosephosphate isomerase from Coccidioides immitis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3M9Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 289 CoimA.00717.a.A1 PS00678 at 27 mg/mL against PACT screen F5, 0.2 M NaNO3, 0.1 M BisTris propane pH 6.5, 20% PEG 3350 with 20% ethylene glycol as cryo-protectant, crystal tracking ID 221044e12, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.05 40.13
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.07 α = 90 b = 42.46 β = 90 c = 50.21 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2011-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.9765 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 96.2 0.1 15.22 7.5 14769 14215 -3 26.994
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.26 85.8 0.338 5.52
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3M9Y 2.2 50 14145 720 95.78 0.1921 0.1902 0.2272 0.1792 RANDOM 19.6382
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -0.92 1.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.101 r_dihedral_angle_4_deg 14.884 r_dihedral_angle_3_deg 13.258 r_dihedral_angle_1_deg 6.039 r_scangle_it 3.516 r_scbond_it 2.133 r_angle_refined_deg 1.38 r_mcangle_it 1.351 r_mcbond_it 0.746 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.101 r_dihedral_angle_4_deg 14.884 r_dihedral_angle_3_deg 13.258 r_dihedral_angle_1_deg 6.039 r_scangle_it 3.516 r_scbond_it 2.133 r_angle_refined_deg 1.38 r_mcangle_it 1.351 r_mcbond_it 0.746 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2011 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 1
Software Software Software Name Purpose XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data reduction