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Crystal structure of fatty acid amide hydrolase with small molecule compound
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MT5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 289 PEG3350, NH4F, pH 5.5, vapor diffusion, hanging drop, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.7 54.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.82 α = 90 b = 104.08 β = 90 c = 147.85 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE ADSC mirrors SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 45.153 100 0.234 5.5 4.3 26148 26148
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.1 3.27 100 0.493 0.493 1.6 4.3 3758
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1MT5 3.1 30 26067 1327 100 0.2676 0.2665 0.2891 0.261 RANDOM 29.2197
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.43 -1.96 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.822 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_4_deg 9.731 r_dihedral_angle_1_deg 3.393 r_angle_refined_deg 0.836 r_scangle_it 0.183 r_scbond_it 0.14 r_mcangle_it 0.098 r_mcbond_it 0.053 r_chiral_restr 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.822 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_4_deg 9.731 r_dihedral_angle_1_deg 3.393 r_angle_refined_deg 0.836 r_scangle_it 0.183 r_scbond_it 0.14 r_mcangle_it 0.098 r_mcbond_it 0.053 r_chiral_restr 0.05 r_bond_refined_d 0.005 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8416 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 36
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction StructureStudio data collection