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EthR from Mycobacterium tuberculosis in complex with compound BDM5683
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 0.1mM Mes pH6.5, 1.5M Ammonium Sulfate and 10% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.39 48.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 121.16 α = 90 b = 121.16 β = 90 c = 33.82 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.9 17607
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 19.9 16710 893 100 0.19117 0.18915 0.1903 0.2315 0.2341 RANDOM 29.882
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.198 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 17.019 r_dihedral_angle_1_deg 5.682 r_scangle_it 4.081 r_scbond_it 2.685 r_mcangle_it 1.74 r_angle_refined_deg 1.508 r_mcbond_it 1.114 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.198 r_dihedral_angle_4_deg 18.808 r_dihedral_angle_3_deg 17.019 r_dihedral_angle_1_deg 5.682 r_scangle_it 4.081 r_scbond_it 2.685 r_mcangle_it 1.74 r_angle_refined_deg 1.508 r_mcbond_it 1.114 r_nbtor_refined 0.306 r_xyhbond_nbd_refined 0.274 r_symmetry_hbond_refined 0.266 r_nbd_refined 0.237 r_symmetry_vdw_refined 0.215 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1510 Nucleic Acid Atoms Solvent Atoms 168 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement