3Q3S

EthR from Mycobacterium tuberculosis in complex with compound BDM5683


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1mM Mes pH6.5, 1.5M Ammonium Sulfate and 10% Glycerol, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
2.3948.56

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 121.16α = 90
b = 121.16β = 90
c = 33.82γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.933ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1219.917607

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT219.9167108931000.191170.189150.2315RANDOM29.882
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.190.19-0.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.198
r_dihedral_angle_4_deg18.808
r_dihedral_angle_3_deg17.019
r_dihedral_angle_1_deg5.682
r_scangle_it4.081
r_scbond_it2.685
r_mcangle_it1.74
r_angle_refined_deg1.508
r_mcbond_it1.114
r_nbtor_refined0.306
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg40.198
r_dihedral_angle_4_deg18.808
r_dihedral_angle_3_deg17.019
r_dihedral_angle_1_deg5.682
r_scangle_it4.081
r_scbond_it2.685
r_mcangle_it1.74
r_angle_refined_deg1.508
r_mcbond_it1.114
r_nbtor_refined0.306
r_xyhbond_nbd_refined0.274
r_symmetry_hbond_refined0.266
r_nbd_refined0.237
r_symmetry_vdw_refined0.215
r_chiral_restr0.104
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1510
Nucleic Acid Atoms
Solvent Atoms168
Heterogen Atoms28

Software

Software
Software NamePurpose
REFMACrefinement