☰ Navigation Tabs
Crystal structure of a putative sulfurtransferase dsrE (Swol_2425) from Syntrophomonas wolfei str. Goettingen at 1.92 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.67 277 0.80M sodium chloride, 24.00% polyethylene glycol 600, 10.00% Glycerol, 0.1M sodium cacodylate pH 6.67, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.18 43.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.416 α = 90 b = 76.504 β = 93.08 c = 127.652 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD 2010-04-08 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97960,0.97925 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 29.453 95.7 0.027 15.37 72995 -3 37.721
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 1.99 94.7 0.566 1.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.92 29.453 72993 3687 98.78 0.1909 0.1896 0.1944 0.2152 0.2183 RANDOM 51.769
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.02 -1.01 -0.11 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.727 r_dihedral_angle_4_deg 22.188 r_dihedral_angle_3_deg 13.747 r_dihedral_angle_1_deg 5.323 r_scangle_it 3.273 r_scbond_it 1.938 r_mcangle_it 1.283 r_angle_refined_deg 1.218 r_angle_other_deg 0.837 r_mcbond_it 0.678
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.727 r_dihedral_angle_4_deg 22.188 r_dihedral_angle_3_deg 13.747 r_dihedral_angle_1_deg 5.323 r_scangle_it 3.273 r_scbond_it 1.938 r_mcangle_it 1.283 r_angle_refined_deg 1.218 r_angle_other_deg 0.837 r_mcbond_it 0.678 r_mcbond_other 0.138 r_chiral_restr 0.076 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7354 Nucleic Acid Atoms Solvent Atoms 185 Heterogen Atoms 36
Software Software Software Name Purpose SHELX phasing REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing