☰ Navigation Tabs
Site-specific Glycosylation of Hemoglobin Utilizing Oxime Ligation Chemistry as a Viable Alternative to PEGylation
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1G0A PDB entry 1G0A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch under Oil 9.5 293 PEG 2250 MME, pH 9.5, Microbatch under Oil, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.977 α = 90 b = 72.995 β = 90 c = 128.483 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 113 IMAGE PLATE RIGAKU OSMIC MIRRORS 2010-07-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 64.24 98.9 30022 29989 2 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1G0A 2.2 38.06 2 30022 28275 1506 98.21 0.22907 0.22637 0.223 0.28057 0.2766 RANDOM 25.605
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.98 -0.33 -0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.52 r_dihedral_angle_3_deg 16.811 r_dihedral_angle_4_deg 12.104 r_dihedral_angle_1_deg 4.563 r_scangle_it 1.779 r_scbond_it 1.043 r_angle_refined_deg 0.992 r_mcangle_it 0.78 r_mcbond_it 0.407 r_chiral_restr 0.068
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.52 r_dihedral_angle_3_deg 16.811 r_dihedral_angle_4_deg 12.104 r_dihedral_angle_1_deg 4.563 r_scangle_it 1.779 r_scbond_it 1.043 r_angle_refined_deg 0.992 r_mcangle_it 0.78 r_mcbond_it 0.407 r_chiral_restr 0.068 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4384 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 180
Software Software Software Name Purpose CrystalClear data collection AMoRE phasing REFMAC refinement CrystalClear data reduction CrystalClear data scaling