3OG3

Crystal structure of an artificial thermostable (BA)8-barrel protein from identical half barrels


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.52930.2 M ammonium sulfate, 18% PEG 4000, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.7629.96

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 31.374α = 90
b = 82.086β = 90.11
c = 74.511γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray123CCDOXFORD RUBY CCDmirrors2009-12-18MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SEALED TUBEOXFORD DIFFRACTION ENHANCE ULTRA1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.0814.799.60.05218.5811304113041126
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.042.1496.80.1683.82.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1THF (Amino acids 99-219) dimer2.0814.651112601071958499.630.1660.151940.149530.19591RANDOM17.478
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-0.08-0.02
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.184
r_dihedral_angle_4_deg13.474
r_dihedral_angle_3_deg11.481
r_dihedral_angle_1_deg6.33
r_scangle_it5.278
r_scbond_it3.343
r_mcangle_it2.345
r_angle_refined_deg2.006
r_mcbond_it1.375
r_chiral_restr0.139
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.184
r_dihedral_angle_4_deg13.474
r_dihedral_angle_3_deg11.481
r_dihedral_angle_1_deg6.33
r_scangle_it5.278
r_scbond_it3.343
r_mcangle_it2.345
r_angle_refined_deg2.006
r_mcbond_it1.375
r_chiral_restr0.139
r_bond_refined_d0.025
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1836
Nucleic Acid Atoms
Solvent Atoms173
Heterogen Atoms12

Software

Software
Software NamePurpose
CrysalisProdata collection
Oxforddata collection
PHASERphasing
REFMACrefinement
CrysalisProdata reduction
Oxforddata reduction
SCALAdata scaling