☰ Navigation Tabs
Crystal structure of a histidine triad (HIT) protein (SMc02904) from SINORHIZOBIUM MELILOTI 1021 at 2.06 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 277 2.4000M (NH4)2SO4, 0.1M Bicine pH 9.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.37 48.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.358 α = 90 b = 71.114 β = 90 c = 85.241 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat mirror (vertical focusing) 2009-12-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.91837,0.97939,0.97904 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.06 29.524 98.4 0.08 10.98 4.05 37041 -3 24.094
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.06 2.13 98.4 0.519 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.06 29.524 37018 1843 99.18 0.17 0.167 0.1709 0.215 0.2144 RANDOM 24.905
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.71 -0.95 2.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_4_deg 17.72 r_dihedral_angle_3_deg 14.07 r_dihedral_angle_1_deg 6.492 r_scangle_it 3.051 r_scbond_it 1.974 r_angle_refined_deg 1.691 r_angle_other_deg 1.271 r_mcangle_it 1.06 r_mcbond_it 0.586
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.182 r_dihedral_angle_4_deg 17.72 r_dihedral_angle_3_deg 14.07 r_dihedral_angle_1_deg 6.492 r_scangle_it 3.051 r_scbond_it 1.974 r_angle_refined_deg 1.691 r_angle_other_deg 1.271 r_mcangle_it 1.06 r_mcbond_it 0.586 r_mcbond_other 0.198 r_chiral_restr 0.069 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4262 Nucleic Acid Atoms Solvent Atoms 471 Heterogen Atoms 89
Software Software Software Name Purpose REFMAC refinement PHENIX refinement SHELX phasing MolProbity model building XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction autoSHARP phasing