3NMP

Crystal structure of the abscisic receptor PYL2 mutant A93F in complex with pyrabactin


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.12932M ammonium acetate, 22% PEG 3350, pH 8.1, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4950.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 62.084α = 90
b = 105.571β = 90
c = 182.901γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 21-ID-D1.00APS21-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.130870.09327.68.23281122

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 3NMH2.129.393537430793252699.720.235830.233550.26634RANDOM45.552
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.040.06-0.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.029
r_dihedral_angle_4_deg18.542
r_sphericity_free15.256
r_dihedral_angle_3_deg14.063
r_sphericity_bonded8.575
r_scangle_it5.139
r_dihedral_angle_1_deg4.382
r_mcangle_it3.791
r_scbond_it3.631
r_rigid_bond_restr3.553
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg41.029
r_dihedral_angle_4_deg18.542
r_sphericity_free15.256
r_dihedral_angle_3_deg14.063
r_sphericity_bonded8.575
r_scangle_it5.139
r_dihedral_angle_1_deg4.382
r_mcangle_it3.791
r_scbond_it3.631
r_rigid_bond_restr3.553
r_mcbond_it2.212
r_angle_refined_deg1.555
r_mcbond_other1.187
r_angle_other_deg0.907
r_chiral_restr0.102
r_bond_refined_d0.02
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4203
Nucleic Acid Atoms
Solvent Atoms223
Heterogen Atoms66

Software

Software
Software NamePurpose
PHASERphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling