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Crystal structure of AqpZ F43W,H174G,T183F
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2O9F PDB entry 2O9F
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 25-30% PEG 2000
100 mM sodium cacodylate
50-100 mM MgCl2, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.57 65.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.892 α = 90 b = 92.892 β = 90 c = 79.476 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 CCD ADSC QUANTUM 210 monochrometer 2006-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.97949 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.1 92.892 88 0.115 0.115 10.6 3 10963 10963 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.1 3.27 90.4 0.679 0.679 1.1 3 1621
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 2O9F 3.1 19.67 10948 519 88.48 0.1992 0.1981 0.2029 0.2219 0.2285 RANDOM 67.397
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 0.08 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.612 r_dihedral_angle_3_deg 17.481 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_1_deg 6.325 r_scangle_it 1.704 r_angle_refined_deg 1.542 r_angle_other_deg 1.093 r_scbond_it 1.014 r_mcangle_it 0.773 r_mcbond_it 0.414
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.612 r_dihedral_angle_3_deg 17.481 r_dihedral_angle_4_deg 17.235 r_dihedral_angle_1_deg 6.325 r_scangle_it 1.704 r_angle_refined_deg 1.542 r_angle_other_deg 1.093 r_scbond_it 1.014 r_mcangle_it 0.773 r_mcbond_it 0.414 r_chiral_restr 0.079 r_mcbond_other 0.079 r_bond_refined_d 0.016 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3372 Nucleic Acid Atoms Solvent Atoms 12 Heterogen Atoms 60
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction ELVES refinement