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Crystal structure of the RNF4 ring domain dimer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 291 0.2M lithium sulfate, 0.1M bis-Tris, 22% PEG 3350, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.778413 30.837214
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.487 α = 90 b = 85.922 β = 90 c = 22.277 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 291 CCD ADSC QUANTUM 210r 2009-07-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 1.2829, 1.2833, 1.2523 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 19.01 99.1 0.067 0.067 16.1 6.6 11041 10936 18.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 98.8 0.274 6.7 6.6 1571
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 18.73 10349 548 98.7 0.19001 0.18729 0.1972 0.24199 0.2093 RANDOM 24.027
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.48 0.91 -1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.216 r_dihedral_angle_4_deg 17.562 r_dihedral_angle_3_deg 14.154 r_dihedral_angle_1_deg 10.746 r_scangle_it 3.715 r_scbond_it 2.27 r_mcangle_it 1.723 r_angle_refined_deg 1.546 r_mcbond_it 0.974 r_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.216 r_dihedral_angle_4_deg 17.562 r_dihedral_angle_3_deg 14.154 r_dihedral_angle_1_deg 10.746 r_scangle_it 3.715 r_scbond_it 2.27 r_mcangle_it 1.723 r_angle_refined_deg 1.546 r_mcbond_it 0.974 r_chiral_restr 0.134 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1038 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 9
Software Software Software Name Purpose SHARP phasing REFMAC refinement XDS data reduction SCALA data scaling