Annotations: 3NG2

Crystal structure of the RNF4 ring domain dimer

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain	e3ng2B1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: Flavin containing amine oxidoreductase / NAD(P)-binding Rossmann-like domain	ECOD (v295.2)
A	Ala_racemase_N	e3ng2A1	A: alpha arrays	X: Repetitive alpha hairpins	H: Ankyrin repeat	T: Ankyrin repeat	F: Ala_racemase_N	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
A	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF13639	Ring finger domain (zf-RING_2)	Ring finger domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	RING finger protein 4	aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding aminoacyltransferase activity ubiquitin-like protein transferase activity catalytic activity, acting on a protein acyltransferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity transferase activity catalytic activity ubiquitin-protein transferase activity transcription factor binding RNA polymerase II-specific DNA-binding transcription factor binding nuclear receptor binding protein binding binding DNA-binding transcription factor binding nuclear androgen receptor binding DNA binding nucleic acid binding ubiquitin-like protein conjugating enzyme binding enzyme binding ubiquitin conjugating enzyme binding SUMO polymer binding SUMO binding ubiquitin-like protein binding TBP-class protein binding general transcription initiation factor binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding nuclear estrogen receptor binding identical protein binding protein-containing complex binding chromatin binding nucleosome binding	developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development developmental process multicellular organismal process gonad development reproductive system development reproductive process sex differentiation animal organ development developmental process involved in reproduction male gonad development male sex differentiation multicellular organism development development of primary male sexual characteristics development of primary sexual characteristics anatomical structure development reproductive structure development animal gross anatomical part developmental process system development spermatogenesis sexual reproduction multicellular organismal reproductive process male gamete generation gamete generation cellular response to stimulus response to stimulus cellular response to ionizing radiation cellular response to radiation cellular response to environmental stimulus response to ionizing radiation cellular response to gamma radiation response to radiation response to abiotic stimulus cellular process cellular response to abiotic stimulus response to gamma radiation protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process regulation of cellular component organization regulation of cellular process membraneless organelle assembly cellular component organization cellular component biogenesis regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly kinetochore organization cellular component organization or biogenesis regulation of biological process organelle assembly protein-containing complex organization biological regulation chromosome organization regulation of chromosome organization regulation of kinetochore assembly regulation of cellular component biogenesis regulation of organelle organization organelle organization kinetochore assembly regulation of organelle assembly regulation of localization protein localization to chromatin regulation of protein localization negative regulation of biological process negative regulation of protein localization to chromatin localization protein localization to chromosome macromolecule localization protein localization to organelle intracellular protein localization regulation of protein localization to chromatin negative regulation of protein localization protein K6-linked ubiquitination protein polyubiquitination response to human chorionic gonadotropin response to gonadotropin response to hormone response to endogenous stimulus response to chemical protein K63-linked ubiquitination protein K11-linked ubiquitination protein K48-linked ubiquitination cellular response to arsenic-containing substance cellular response to chemical stimulus response to arsenic-containing substance cellular response to testosterone stimulus response to ketone response to lipid response to oxygen-containing compound cellular response to oxygen-containing compound response to testosterone cellular response to lipid cellular response to ketone positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process regulation of cytoskeleton organization microtubule cytoskeleton organization cell cycle regulation of cell cycle chromosome segregation spindle organization cell cycle process regulation of cell cycle process regulation of microtubule-based process regulation of spindle organization spindle assembly regulation of spindle assembly microtubule-based process cytoskeleton organization regulation of microtubule cytoskeleton organization cellular response to nitrogen compound cellular response to hydroxyurea response to hydroxyurea response to nitrogen compound transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of transcription by RNA polymerase II response to estradiol response to peptide response to cytokine cellular response to cytokine stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen intracellular membraneless organelle nuclear body membraneless organelle PML body

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR043295	RNF4, RING finger, HC subclass	Domain
A, B	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
A, B	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
A, B	IPR047134	E3 ubiquitin-protein ligase RNF4	Family
A, B	IPR001841	Zinc finger, RING-type	Domain