3MC4

Crystal structure of WW/RSP5/WWP domain: bacterial transferase hexapeptide repeat: serine O-Acetyltransferase from Brucella Melitensis


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP7.4290MD PACT SCREEN, E4: 20% PEG 3350, 200MM KSCN; protein at 9.5MG/ML, PH 7.4, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 290K
Crystal Properties
Matthews coefficientSolvent content
1.7529.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 104.03α = 90
b = 104.03β = 90
c = 105.54γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDRIGAKU SATURN 944+2010-03-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9545.5399.90.07516.784.93106731049-326.91
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.95299.80.452.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY: 1SSQ1.9545.533104831048156499.80.1320.1320.1310.156RANDOM17.96
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
9.559.55-19.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.171
r_dihedral_angle_4_deg16.31
r_dihedral_angle_3_deg15.043
r_dihedral_angle_1_deg6.104
r_scangle_it2.993
r_scbond_it1.885
r_angle_refined_deg1.515
r_angle_other_deg1.057
r_mcangle_it0.905
r_mcbond_it0.518
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.171
r_dihedral_angle_4_deg16.31
r_dihedral_angle_3_deg15.043
r_dihedral_angle_1_deg6.104
r_scangle_it2.993
r_scbond_it1.885
r_angle_refined_deg1.515
r_angle_other_deg1.057
r_mcangle_it0.905
r_mcbond_it0.518
r_mcbond_other0.135
r_chiral_restr0.093
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3698
Nucleic Acid Atoms
Solvent Atoms242
Heterogen Atoms11

Software

Software
Software NamePurpose
StructureStudiodata collection
PHASERphasing
REFMACrefinement
XDSdata reduction
XSCALEdata scaling