3M3W

Crystal structure of mouse PACSIN3 BAR domain mutant


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
3.2562.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.494α = 90
b = 52.265β = 94.81
c = 196.461γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2010-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRF BEAMLINE BL17U0.9798SSRFBL17U

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63094.629998283703
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.63

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.6152999828282149299.760.23460.232220.28058RANDOM50.991
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.33-0.310.04-0.43
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.497
r_dihedral_angle_3_deg20.116
r_dihedral_angle_4_deg19.121
r_dihedral_angle_1_deg5.387
r_angle_refined_deg1.297
r_nbtor_refined0.301
r_symmetry_vdw_refined0.248
r_nbd_refined0.214
r_symmetry_hbond_refined0.199
r_xyhbond_nbd_refined0.164
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.497
r_dihedral_angle_3_deg20.116
r_dihedral_angle_4_deg19.121
r_dihedral_angle_1_deg5.387
r_angle_refined_deg1.297
r_nbtor_refined0.301
r_symmetry_vdw_refined0.248
r_nbd_refined0.214
r_symmetry_hbond_refined0.199
r_xyhbond_nbd_refined0.164
r_chiral_restr0.103
r_bond_refined_d0.011
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_it
r_mcbond_other
r_mcangle_it
r_scbond_it
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4550
Nucleic Acid Atoms
Solvent Atoms10
Heterogen Atoms

Software

Software
Software NamePurpose
ADSCdata collection
CNSrefinement
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling
CNSphasing