☰ Navigation Tabs
Crystal structure of aprotinin in complex with sucrose octasulfate: unusual interactions and implication for heparin binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 295 100mM sodium acetate, 2M ammonium sulfate, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 3.47 64.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.08 α = 90 b = 119.08 β = 90 c = 110.794 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A 1.0 PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 93.2 0.092 9.3 22695
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.25 78.5 0.486
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 34.77 24077 21531 1164 94.26 0.207 0.206 0.206 0.234 0.2361 RANDOM 21.203
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.35 0.17 0.35 -0.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 21.292 r_dihedral_angle_2_deg 19.192 r_dihedral_angle_3_deg 13.808 r_dihedral_angle_1_deg 6.1 r_rigid_bond_restr 2.894 r_sphericity_free 2.876 r_scangle_it 2.698 r_scbond_it 2.658 r_sphericity_bonded 1.414 r_mcangle_it 1.363
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 21.292 r_dihedral_angle_2_deg 19.192 r_dihedral_angle_3_deg 13.808 r_dihedral_angle_1_deg 6.1 r_rigid_bond_restr 2.894 r_sphericity_free 2.876 r_scangle_it 2.698 r_scbond_it 2.658 r_sphericity_bonded 1.414 r_mcangle_it 1.363 r_angle_refined_deg 1.177 r_mcbond_it 0.83 r_nbtor_refined 0.312 r_symmetry_hbond_refined 0.223 r_nbd_refined 0.188 r_symmetry_vdw_refined 0.186 r_xyhbond_nbd_refined 0.128 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2248 Nucleic Acid Atoms Solvent Atoms 220 Heterogen Atoms 107
Software Software Software Name Purpose MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling