X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP3.52930.15M citric acid pH 3.5, 16% w/v PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.4349.51

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.225α = 100.25
b = 73.912β = 94.26
c = 90.793γ = 112.15
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-09-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID23-10.930ESRFID23-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.5730970.0770.07723.93.819213917.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.571.695.40.4460.4462.13.78616

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1ZV91.5729.631768879366970.18050.178130.22554RANDOM15.626
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.11-0.360.490.750.210.25
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.396
r_dihedral_angle_4_deg15.841
r_dihedral_angle_3_deg11.116
r_scangle_it7.76
r_dihedral_angle_1_deg7.2
r_scbond_it5.726
r_mcangle_it3.585
r_mcbond_it2.354
r_rigid_bond_restr1.917
r_angle_refined_deg1.333
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.396
r_dihedral_angle_4_deg15.841
r_dihedral_angle_3_deg11.116
r_scangle_it7.76
r_dihedral_angle_1_deg7.2
r_scbond_it5.726
r_mcangle_it3.585
r_mcbond_it2.354
r_rigid_bond_restr1.917
r_angle_refined_deg1.333
r_angle_other_deg0.845
r_mcbond_other0.728
r_chiral_restr0.081
r_bond_refined_d0.01
r_gen_planes_refined0.005
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10245
Nucleic Acid Atoms
Solvent Atoms2156
Heterogen Atoms126

Software

Software
Software NamePurpose
ProDCdata collection
MOLREPphasing
REFMACrefinement
HKL-2000data reduction
SCALEPACKdata scaling