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Structure of the tfp-ca2+-bound activated form of the s100a4 Metastasis factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 0.1M HEPES, 30% v/v Jeffamine ED-2001, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.77 55.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.794 α = 90 b = 102.492 β = 92.59 c = 116.629 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2006-03-28 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9791 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 96.8 0.077 0.077 110852
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.3 2.34 89.2 0.315 5083
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 19.94 110852 5579 97.67 0.208 0.206 0.2257 0.259 0.2731 RANDOM 28.439
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 0.06 0.09 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.678 r_dihedral_angle_4_deg 22.377 r_dihedral_angle_3_deg 19.737 r_scbond_it 11.121 r_dihedral_angle_1_deg 5.862 r_mcangle_it 5.134 r_angle_refined_deg 1.745 r_scangle_it 1.246 r_mcbond_it 1.217 r_chiral_restr 0.168
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.678 r_dihedral_angle_4_deg 22.377 r_dihedral_angle_3_deg 19.737 r_scbond_it 11.121 r_dihedral_angle_1_deg 5.862 r_mcangle_it 5.134 r_angle_refined_deg 1.745 r_scangle_it 1.246 r_mcbond_it 1.217 r_chiral_restr 0.168 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 14735 Nucleic Acid Atoms Solvent Atoms 910 Heterogen Atoms 1160
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction