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Crystal Structure of Human p38alpha Complexed With a Triazolopyrimidine compound
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 20-30% PEG3000, 10 mM CaCl2, 50 mM CHES, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.068 α = 90 b = 74.329 β = 90 c = 77.617 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD ADSC QUANTUM 210 monochromator crystal 2004-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 97.7 0.037 0.037 36.3 4.1 25360 25360 -1.5 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 99.6 0.356 0.356 3.2 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2 24.81 24043 1288 97.63 0.23527 0.23328 0.27384 0.2949 RANDOM 24.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -1.23 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.329 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_4_deg 12.639 r_dihedral_angle_1_deg 5.695 r_scangle_it 2.815 r_scbond_it 1.766 r_mcangle_it 1.385 r_angle_refined_deg 1.313 r_angle_other_deg 0.919 r_mcbond_it 0.753
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.329 r_dihedral_angle_3_deg 16.355 r_dihedral_angle_4_deg 12.639 r_dihedral_angle_1_deg 5.695 r_scangle_it 2.815 r_scbond_it 1.766 r_mcangle_it 1.385 r_angle_refined_deg 1.313 r_angle_other_deg 0.919 r_mcbond_it 0.753 r_symmetry_vdw_other 0.205 r_symmetry_hbond_refined 0.158 r_xyhbond_nbd_refined 0.151 r_mcbond_other 0.135 r_symmetry_vdw_refined 0.127 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2715 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 29
Software Software Software Name Purpose HKL-2000 data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling