☰ Navigation Tabs
The structure of a putative MarR family transcriptional regulator from Clostridium acetobutylicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 289 0.2M potassium thiocyanate, 20% PEG 3350, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.29 46.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.115 α = 90 b = 53.295 β = 112.02 c = 90.821 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2008-03-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97949, 0.97935 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 99.6 0.092 7.8 7.6 27599 27599 -3 31.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.14 99.8 0.453 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.6 27351 27351 1379 99.64 0.203 0.203 0.201 0.242 0.2958 RANDOM 24.376
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.71 -1.31 0.49 -0.76
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.2 r_dihedral_angle_4_deg 21.385 r_dihedral_angle_3_deg 16.589 r_dihedral_angle_1_deg 4.904 r_scangle_it 4.378 r_scbond_it 2.701 r_mcangle_it 1.496 r_angle_refined_deg 1.319 r_angle_other_deg 0.874 r_mcbond_it 0.802
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.2 r_dihedral_angle_4_deg 21.385 r_dihedral_angle_3_deg 16.589 r_dihedral_angle_1_deg 4.904 r_scangle_it 4.378 r_scbond_it 2.701 r_mcangle_it 1.496 r_angle_refined_deg 1.319 r_angle_other_deg 0.874 r_mcbond_it 0.802 r_mcbond_other 0.205 r_chiral_restr 0.08 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3019 Nucleic Acid Atoms Solvent Atoms 280 Heterogen Atoms 18
Software Software Software Name Purpose MLPHARE phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXD phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building CCP4 phasing O model building Coot model building