3JBS

eL6 protein from yeast 60S ribosomal subunit


ELECTRON MICROSCOPY
Sample
Saccharomyces cerevisiae large 60S ribosomal subunit
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentHOMEMADE PLUNGER
Cryogen NameETHANE
Sample Vitrification DetailsA 3 uL sample was applied onto a freshly plasma-treated (6 seconds, Gatan Solarus plasma cleaner) holey carbon C-flat grid (Protochips, Inc.), allowin ...A 3 uL sample was applied onto a freshly plasma-treated (6 seconds, Gatan Solarus plasma cleaner) holey carbon C-flat grid (Protochips, Inc.), allowing the sample to adsorb for 30 seconds. The sample was then plunge-frozen in liquid ethane using a manual cryo-plunger in ambient atmosphere at 4 degrees C.
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles75653
Reported Resolution (Å)2.9
Resolution MethodFSC 0.143 CUT-OFF
Other DetailsB-factor of -50 applied to final map (Single particle--Applied symmetry: C1).
Refinement Type
Symmetry TypePOINT
Point SymmetryC1
Map-Model Fitting and Refinement
Id1 (4UJQ)
Refinement SpaceREAL
Refinement ProtocolFLEXIBLE FIT
Refinement TargetFSC
Overall B Value50
Fitting Procedure
DetailsREFINEMENT PROTOCOL--flexible
Data Acquisition
Detector TypeGATAN K2 (4k x 4k)
Electron Dose (electrons/Å**2)25
Imaging Experiment1
Date of Experiment2014-09-02
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)500
Maximum Defocus (nm)2500
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.7
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification22500
Calibrated Magnification38167
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Detailssuper-resolution imaging
EM Software
TaskSoftware PackageVersion
MODEL FITTINGRosetta
MODEL FITTINGUCSF Chimera
RECONSTRUCTIONFREALIGN
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
each particle