3JBS
eL6 protein from yeast 60S ribosomal subunit
ELECTRON MICROSCOPY
Sample |
---|
Saccharomyces cerevisiae large 60S ribosomal subunit |
Specimen Preparation | |
---|---|
Sample Aggregation State | PARTICLE |
Vitrification Instrument | HOMEMADE PLUNGER |
Cryogen Name | ETHANE |
Sample Vitrification Details | A 3 uL sample was applied onto a freshly plasma-treated (6 seconds, Gatan Solarus plasma cleaner) holey carbon C-flat grid (Protochips, Inc.), allowin ... |
3D Reconstruction | |
---|---|
Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 75653 |
Reported Resolution (Å) | 2.9 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | B-factor of -50 applied to final map (Single particle--Applied symmetry: C1). |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | C1 |
Map-Model Fitting and Refinement | |||||
---|---|---|---|---|---|
Id | 1 (4UJQ) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | FLEXIBLE FIT | ||||
Refinement Target | FSC | ||||
Overall B Value | 50 | ||||
Fitting Procedure | |||||
Details | REFINEMENT PROTOCOL--flexible |
Data Acquisition | |||||||||
---|---|---|---|---|---|---|---|---|---|
Detector Type | GATAN K2 (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 25 |
Imaging Experiment | 1 |
---|---|
Date of Experiment | 2014-09-02 |
Temperature (Kelvin) | |
Microscope Model | FEI TITAN KRIOS |
Minimum Defocus (nm) | 500 |
Maximum Defocus (nm) | 2500 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | FEI TITAN KRIOS AUTOGRID HOLDER |
Nominal Magnification | 22500 |
Calibrated Magnification | 38167 |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 300 |
Imaging Details | super-resolution imaging |
EM Software | ||
---|---|---|
Task | Software Package | Version |
MODEL FITTING | Rosetta | |
MODEL FITTING | UCSF Chimera | |
RECONSTRUCTION | FREALIGN |
Image Processing | ||||
---|---|---|---|---|
CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
each particle |