3JBB
Characterization of red-shifted phycobiliprotein complexes isolated from the chlorophyll f-containing cyanobacterium Halomicronema hongdechloris
ELECTRON MICROSCOPY
Sample |
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Red-shifted phycobilisomes from Halomicronema hongdechloris |
Sample Components |
APC phycobilisome complex |
Specimen Preparation | |
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Sample Aggregation State | PARTICLE |
Staining Type | NEGATIVE |
Staining Material | uranyl acetate |
Staining Details |
3D Reconstruction | |
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Reconstruction Method | SINGLE PARTICLE |
Number of Particles | 420 |
Reported Resolution (Å) | 26 |
Resolution Method | FSC 0.33 CUT-OFF |
Other Details | (Single particle details: Semiautomatic selection using e2boxer.py swarm function) (Single particle--Applied symmetry: D3) |
Refinement Type | |
Symmetry Type | POINT |
Point Symmetry | D3 |
Map-Model Fitting and Refinement | |||||
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Id | 1 (4PO5, 4PO5) | ||||
Refinement Space | REAL | ||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details | REFINEMENT PROTOCOL--rigid body DETAILS--Two trimers were fitted to each end of the EM map. 99.5% of atoms fit within the map at contour level 0.87 |
Data Acquisition | |||||||||
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Detector Type | GENERIC IMAGE PLATES | ||||||||
Electron Dose (electrons/Å**2) |
Imaging Experiment | 1 |
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Date of Experiment | 2015-06-08 |
Temperature (Kelvin) | |
Microscope Model | FEI/PHILIPS CM10 |
Minimum Defocus (nm) | |
Maximum Defocus (nm) | 3000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | PHILIPS ROTATION HOLDER |
Nominal Magnification | 180000 |
Calibrated Magnification | |
Source | TUNGSTEN HAIRPIN |
Acceleration Voltage (kV) | 100 |
Imaging Details | PHILIPS CM10 |
EM Software | ||
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Task | Software Package | Version |
MODEL FITTING | UCSF Chimera | |
RECONSTRUCTION | EMAN | 2 |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
Each particle |