3JAY

Atomic model of transcribing cytoplasmic polyhedrosis virus


ELECTRON MICROSCOPY

Refinement

RMS Deviations
KeyRefinement Restraint Deviation
f_dihedral_angle_d15.079
f_angle_d1.06
f_chiral_restr0.074
f_bond_d0.006
f_plane_restr0.005
Sample
Cytoplasmic polyhedrosis virus with SAM and 4 NTPs
Sample Components
Bombyx mori cypovirus 1
Specimen Preparation
Sample Aggregation StatePARTICLE
Vitrification InstrumentFEI VITROBOT MARK II
Cryogen NameETHANE
Sample Vitrification DetailsPlunged into liquid ethane (FEI VITROBOT MARK II)
3D Reconstruction
Reconstruction MethodSINGLE PARTICLE
Number of Particles41624
Reported Resolution (Å)3
Resolution MethodFSC 0.143 CUT-OFF
Other Details(Single particle--Applied symmetry: I)
Refinement Type
Symmetry TypePOINT
Point SymmetryI
Map-Model Fitting and Refinement
Id1
Refinement Space
Refinement Protocol
Refinement Target
Overall B Value
Fitting Procedure
Details
Data Acquisition
Detector TypeKODAK SO-163 FILM
Electron Dose (electrons/Å**2)25
Imaging Experiment1
Date of Experiment2012-11-01
Temperature (Kelvin)
Microscope ModelFEI TITAN KRIOS
Minimum Defocus (nm)
Maximum Defocus (nm)
Minimum Tilt Angle (degrees)
Maximum Tilt Angle (degrees)
Nominal CS2.75
Imaging ModeBRIGHT FIELD
Specimen Holder ModelFEI TITAN KRIOS AUTOGRID HOLDER
Nominal Magnification59000
Calibrated Magnification60535
SourceFIELD EMISSION GUN
Acceleration Voltage (kV)300
Imaging Details
EM Software
TaskSoftware PackageVersion
RECONSTRUCTIONIMIRS
Image Processing
CTF Correction TypeCTF Correction DetailsNumber of Particles SelectedParticle Selection Details
Each particle