3JAY | pdb_00003jay

Atomic model of transcribing cytoplasmic polyhedrosis virus

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	EUF07968	e3jayE1	A: alpha arrays	X: Viral structural protein 5 (From Topology)	H: Viral structural protein 5 (From Topology)	T: Viral structural protein 5	F: EUF07968	ECOD (1.6)
D	EUF07968	e3jayD1	A: alpha arrays	X: Viral structural protein 5 (From Topology)	H: Viral structural protein 5 (From Topology)	T: Viral structural protein 5	F: EUF07968	ECOD (1.6)
C	EUF08564	e3jayC1	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: EUF08564	ECOD (1.6)
C	EUF08644	e3jayC2	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: EUF08644	ECOD (1.6)
B	EUF08564	e3jayB2	A: a+b complex topology	X: Inner layer core protein p3-related (From Topology)	H: Inner layer core protein p3-related (From Topology)	T: Inner layer core protein p3-related	F: EUF08564	ECOD (1.6)
B	EUF08644	e3jayB1	A: a/b three-layered sandwiches	X: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	H: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein (From Topology)	T: Small protrusion domain in cytoplasmic polyhedrosis virus capsid shell protein	F: EUF08644	ECOD (1.6)
A	EUF08555	e3jayA2	A: a+b complex topology	X: Reovirus guanylyltransferase (GTase) (From Topology)	H: Reovirus guanylyltransferase (GTase) (From Topology)	T: Reovirus guanylyltransferase (GTase)	F: EUF08555	ECOD (1.6)
A	EUF08556	e3jayA1	A: a+b complex topology	X: Reovirus turret protein bridge domain (From Topology)	H: Reovirus turret protein bridge domain (From Topology)	T: Reovirus turret protein bridge domain	F: EUF08556	ECOD (1.6)
A	EUF08594	e3jayA3	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: EUF08594	ECOD (1.6)
A	EUF08595	e3jayA4	A: a/b three-layered sandwiches	X: Rossmann-like	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: EUF08595	ECOD (1.6)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D, E	Viral structural protein 5	-	-	-
B, C	Capsid protein VP1	-	-	viral capsid icosahedral viral capsid virion component viral inner capsid T=2 icosahedral viral capsid
A	Structural protein VP3	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D, E	IPR049423	Viral structural protein 5	Family
B, C	IPR049422	Capsid protein VP1/VP3, C-terminal	Domain
B, C	IPR049421	Inner capsid protein VP1, small protrusion domain	Domain
A	IPR048605	Reovirus VP3 protein, bridge domain	Domain
A	IPR048606	Reovirus VP3 protein, Methyltransferase domain 2	Domain
A	IPR048607	Reovirus VP3 protein, Methyltransferase domain 1	Domain
A	IPR048608	Reovirus VP3 protein, guanylyltransferase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.