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Bovine papillomavirus type 1 outer capsid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DZL
Sample BOVINE PAPILLOMAVIRUS TYPE 1 (BPV1), FULL VIRION
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument HOMEMADE PLUNGER Cryogen Name ETHANE Sample Vitrification Details VITRIFICATION CARRIED OUT IN COLD ROOM.
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 3997 Reported Resolution (Å) 4.2 Resolution Method Other Details EWALD SPHERE CORRECTION Refinement Type Symmetry Type POINT Point Symmetry I
Map-Model Fitting and Refinement Id 1 (1DZL) Refinement Space RECIPROCAL Refinement Protocol RIGID BODY FIT Refinement Target MLHL TARGET WITH AMPL. AND PHASE PROBABILITY DISTRIBUTION Overall B Value 131 Fitting Procedure Details METHOD--RIGID BODY DOCKING, THEN COORDINATE REFINEMENT IN CNS REFINEMENT
PROTOCOL--SEE 3D-FITTING DETAILS
Data Acquisition Detector Type KODAK SO-163 FILM Electron Dose (electrons/Å**2) 25
Imaging Experiment 1 Date of Experiment 2008-12-07 Temperature (Kelvin) 77 Microscope Model FEI TECNAI F30 Minimum Defocus (nm) 1800 Maximum Defocus (nm) 2900 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2 Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification 59000 Calibrated Magnification 56588 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details OBJ APERTURE CUTOFF AT 2.4A
EM Software Task Software Package Version MODEL FITTING CNS RECONSTRUCTION FREALIGN
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details CTFILT3 WITH INDIVIDUAL PARTICLE ADJUSTMENT