3IYJ
Bovine papillomavirus type 1 outer capsid
ELECTRON MICROSCOPY
| Sample |
|---|
| BOVINE PAPILLOMAVIRUS TYPE 1 (BPV1), FULL VIRION |
| Specimen Preparation | |
|---|---|
| Sample Aggregation State | PARTICLE |
| Vitrification Instrument | HOMEMADE PLUNGER |
| Cryogen Name | ETHANE |
| Sample Vitrification Details | VITRIFICATION CARRIED OUT IN COLD ROOM. |
| 3D Reconstruction | |
|---|---|
| Reconstruction Method | SINGLE PARTICLE |
| Number of Particles | 3997 |
| Reported Resolution (Å) | 4.2 |
| Resolution Method | |
| Other Details | EWALD SPHERE CORRECTION |
| Refinement Type | |
| Symmetry Type | POINT |
| Point Symmetry | I |
| Map-Model Fitting and Refinement | |||||
|---|---|---|---|---|---|
| Id | 1 (1DZL) | ||||
| Refinement Space | RECIPROCAL | ||||
| Refinement Protocol | RIGID BODY FIT | ||||
| Refinement Target | MLHL TARGET WITH AMPL. AND PHASE PROBABILITY DISTRIBUTION | ||||
| Overall B Value | 131 | ||||
| Fitting Procedure | |||||
| Details | METHOD--RIGID BODY DOCKING, THEN COORDINATE REFINEMENT IN CNS REFINEMENT PROTOCOL--SEE 3D-FITTING DETAILS | ||||
| Data Acquisition | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| Detector Type | KODAK SO-163 FILM | ||||||||
| Electron Dose (electrons/Å**2) | 25 | ||||||||
| Imaging Experiment | 1 |
|---|---|
| Date of Experiment | 2008-12-07 |
| Temperature (Kelvin) | 77 |
| Microscope Model | FEI TECNAI F30 |
| Minimum Defocus (nm) | 1800 |
| Maximum Defocus (nm) | 2900 |
| Minimum Tilt Angle (degrees) | |
| Maximum Tilt Angle (degrees) | |
| Nominal CS | 2 |
| Imaging Mode | BRIGHT FIELD |
| Specimen Holder Model | |
| Nominal Magnification | 59000 |
| Calibrated Magnification | 56588 |
| Source | FIELD EMISSION GUN |
| Acceleration Voltage (kV) | 300 |
| Imaging Details | OBJ APERTURE CUTOFF AT 2.4A |
| EM Software | ||
|---|---|---|
| Task | Software Package | Version |
| MODEL FITTING | CNS | |
| RECONSTRUCTION | FREALIGN | |
| Image Processing | ||||
|---|---|---|---|---|
| CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
| CTFILT3 WITH INDIVIDUAL PARTICLE ADJUSTMENT | ||||
