X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.82930.2M Sodium citrate, 1M Ammonium sulphate, 0.1M Copper chloride, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.8935.03

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.559α = 90
b = 81.559β = 90
c = 68.825γ = 120
Symmetry
Space GroupP 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plateMirrors2009-01-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEBRUKER AXS MICROSTAR1.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.23099.80.06490.05673.35.412470628.26
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.22.399.10.23110.20221.15.0165208

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1MSO2.226.724706128699.90.269450.267970.29882RANDOM26.186
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.11-0.210.32
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.15
r_dihedral_angle_3_deg21.093
r_dihedral_angle_4_deg18.834
r_dihedral_angle_1_deg8.33
r_scangle_it3.805
r_scbond_it2.779
r_angle_refined_deg1.826
r_mcangle_it1.744
r_mcbond_it1.12
r_symmetry_vdw_refined0.348
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.15
r_dihedral_angle_3_deg21.093
r_dihedral_angle_4_deg18.834
r_dihedral_angle_1_deg8.33
r_scangle_it3.805
r_scbond_it2.779
r_angle_refined_deg1.826
r_mcangle_it1.744
r_mcbond_it1.12
r_symmetry_vdw_refined0.348
r_symmetry_hbond_refined0.311
r_nbtor_refined0.309
r_nbd_refined0.272
r_xyhbond_nbd_refined0.241
r_chiral_restr0.123
r_bond_refined_d0.019
r_metal_ion_refined0.015
r_symmetry_metal_ion_refined0.009
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4821
Nucleic Acid Atoms
Solvent Atoms310
Heterogen Atoms12

Software

Software
Software NamePurpose
MAR345dtbdata collection
AMoREphasing
REFMACrefinement
AUTOMARdata reduction
SCALEPACKdata scaling