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CRYSTAL STRUCTURE OF HISTIDINE TRIAD PROTEIN blr8122 FROM Bradyrhizobium japonicum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100MM BIS-TRIS-HCL, PH 6.5, 30% Pentaerythritol Ethoxylate, 50MM AMMONIUM SULFATE, 10% GLYCEROL, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K
Crystal Properties Matthews coefficient Solvent content 2.16 43.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.02 α = 90 b = 104.02 β = 90 c = 53.563 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 315 MIRRORS 2009-06-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 100 0.078 6.2 12.5 30189 -5 27.043
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.81 100 0.84 1.7 12.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.75 20 29156 967 99.96 0.17937 0.17808 0.1779 0.21821 0.2205 RANDOM 30.953
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.09 1.09 -2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.274 r_dihedral_angle_4_deg 15.915 r_dihedral_angle_3_deg 12.04 r_dihedral_angle_1_deg 6.839 r_scangle_it 6.471 r_scbond_it 4.493 r_mcangle_it 3.892 r_mcbond_it 2.951 r_angle_refined_deg 1.309 r_nbtor_refined 0.299
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.274 r_dihedral_angle_4_deg 15.915 r_dihedral_angle_3_deg 12.04 r_dihedral_angle_1_deg 6.839 r_scangle_it 6.471 r_scbond_it 4.493 r_mcangle_it 3.892 r_mcbond_it 2.951 r_angle_refined_deg 1.309 r_nbtor_refined 0.299 r_nbd_refined 0.165 r_symmetry_vdw_refined 0.157 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.117 r_chiral_restr 0.1 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2145 Nucleic Acid Atoms Solvent Atoms 259 Heterogen Atoms 6
Software Software Software Name Purpose SHELXD phasing REFMAC refinement DENZO data reduction HKL-2000 data scaling