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Structure of morphinone reductase N189A mutant in complex with tetrahydroNAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2R14 PDB ENTRY 2R14
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 0.1M Hepes, pH7.5, 0.1M MgCl2, 35% PEG400, Crystals were soaked in a 50% Ammonium sulfate Solution, containing 100mM NADH4, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.32 62.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.651 α = 90 b = 122.941 β = 90 c = 179.587 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-04-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9696 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.28 44.9 92.1 0.077 7.4 23517
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.28 2.5 94.6 0.291 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2R14 2.28 44.9 25634 22214 1188 91.29 0.18545 0.1831 0.1822 0.22935 0.2281 RANDOM 27.016
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.01 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.02 r_dihedral_angle_4_deg 17.133 r_dihedral_angle_3_deg 15.905 r_dihedral_angle_1_deg 6.657 r_scangle_it 3.799 r_scbond_it 2.57 r_angle_refined_deg 1.795 r_mcangle_it 1.543 r_mcbond_it 0.877 r_chiral_restr 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.02 r_dihedral_angle_4_deg 17.133 r_dihedral_angle_3_deg 15.905 r_dihedral_angle_1_deg 6.657 r_scangle_it 3.799 r_scbond_it 2.57 r_angle_refined_deg 1.795 r_mcangle_it 1.543 r_mcbond_it 0.877 r_chiral_restr 0.114 r_bond_refined_d 0.02 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2819 Nucleic Acid Atoms Solvent Atoms 174 Heterogen Atoms 57
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling