3GL0

Crystal structure of dicamba monooxygenase bound to 3,6 dichlorosalicylic acid (DCSA)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP52985% PEG 4000, 100 mM sodium acetate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.652.76

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.205α = 90
b = 81.205β = 90
c = 158.557γ = 120
Symmetry
Space GroupP 32

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315Bent Rh coated conical Si mirror2007-03-12MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-C0.9APS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.757099.50.06627.87.3118165117603
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.751.8199.80.811.6411814

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT1.7542.25118165117603589899.50.169720.16780.20619RANDOM26.16
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.260.130.26-0.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.926
r_dihedral_angle_4_deg17.881
r_dihedral_angle_3_deg13.693
r_dihedral_angle_1_deg10.189
r_scangle_it6.695
r_scbond_it5.335
r_mcangle_it3.493
r_mcbond_it3.239
r_angle_refined_deg1.28
r_mcbond_other1.119
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg32.926
r_dihedral_angle_4_deg17.881
r_dihedral_angle_3_deg13.693
r_dihedral_angle_1_deg10.189
r_scangle_it6.695
r_scbond_it5.335
r_mcangle_it3.493
r_mcbond_it3.239
r_angle_refined_deg1.28
r_mcbond_other1.119
r_angle_other_deg0.735
r_symmetry_hbond_refined0.437
r_symmetry_vdw_other0.328
r_symmetry_vdw_refined0.281
r_nbd_other0.242
r_nbd_refined0.227
r_xyhbond_nbd_refined0.208
r_nbtor_refined0.187
r_chiral_restr0.09
r_nbtor_other0.09
r_bond_refined_d0.011
r_gen_planes_refined0.01
r_bond_other_d
r_gen_planes_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7672
Nucleic Acid Atoms
Solvent Atoms924
Heterogen Atoms82

Software

Software
Software NamePurpose
ADSCdata collection
SHELXDEphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling