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Crystal structure of putative conjugative transposon recombinase from Clostridium difficile
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 298 0.1M Bis-Tris pH 6.5, 28% PEG monomethylether 2000, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.69 54.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.47 α = 90 b = 71.318 β = 90 c = 94.176 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2009-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.9790 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.84 0.121 10.1 11 29582 29582 33.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 86.1 0.459 2.86 6.2 2557
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 47.84 28009 1493 98.35 0.201 0.199 0.1987 0.23918 0.2363 RANDOM 22.495
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.04 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.099 r_dihedral_angle_4_deg 18.22 r_dihedral_angle_3_deg 15.982 r_dihedral_angle_1_deg 7.419 r_scangle_it 5.843 r_scbond_it 4.086 r_mcangle_it 1.903 r_angle_refined_deg 1.583 r_mcbond_it 0.992 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.099 r_dihedral_angle_4_deg 18.22 r_dihedral_angle_3_deg 15.982 r_dihedral_angle_1_deg 7.419 r_scangle_it 5.843 r_scbond_it 4.086 r_mcangle_it 1.903 r_angle_refined_deg 1.583 r_mcbond_it 0.992 r_nbtor_refined 0.298 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.219 r_xyhbond_nbd_refined 0.123 r_symmetry_hbond_refined 0.12 r_chiral_restr 0.104 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2363 Nucleic Acid Atoms Solvent Atoms 184 Heterogen Atoms 7
Software Software Software Name Purpose CBASS data collection SHELXD phasing SHARP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling