3FZ0

Inosine-Guanosine Nucleoside Hydrolase (IG-NH)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.1M Bis-Tris, 200mM ammonium sulfate, 22% PEG MME 3350, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.3347.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 124.69α = 90
b = 116.04β = 90
c = 204.76γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 2102004-06-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.97565ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.585.1399.60.11816.17.251751-3-343.5
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.6497.10.5464.77.17263

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Q8F2.519.934881148811262099.90.191020.18920.22433RANDOM63.673
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.21-0.030.24
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.428
r_dihedral_angle_4_deg17.712
r_dihedral_angle_3_deg15.505
r_dihedral_angle_1_deg6.343
r_scangle_it2.458
r_scbond_it1.547
r_angle_refined_deg1.468
r_mcangle_it0.949
r_mcbond_it0.56
r_symmetry_hbond_refined0.364
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.428
r_dihedral_angle_4_deg17.712
r_dihedral_angle_3_deg15.505
r_dihedral_angle_1_deg6.343
r_scangle_it2.458
r_scbond_it1.547
r_angle_refined_deg1.468
r_mcangle_it0.949
r_mcbond_it0.56
r_symmetry_hbond_refined0.364
r_nbtor_refined0.31
r_symmetry_vdw_refined0.3
r_nbd_refined0.208
r_xyhbond_nbd_refined0.141
r_chiral_restr0.099
r_metal_ion_refined0.084
r_bond_refined_d0.015
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms10272
Nucleic Acid Atoms
Solvent Atoms186
Heterogen Atoms60

Software

Software
Software NamePurpose
DNAdata collection
MOLREPphasing
REFMACrefinement
XDSdata reduction
SCALAdata scaling