3FPH

Crystal Structure of E81Q mutant of MtNAS in complex with L-Glutamate


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP829422% PEG 3350, 400mM NaBr, pH 8, vapor diffusion, hanging drop, temperature 294K
Crystal Properties
Matthews coefficientSolvent content
2.550.79

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 66.198α = 90
b = 69.785β = 90
c = 146.506γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42008-06-17MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-40.96850ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.866.22797.40.0690.0695.4154.46317861535
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.999.90.4680.4681.64.49161

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3FPE1.860.361496306796.530.1930.1910.246RANDOM28.107
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.70.09-0.79
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.998
r_dihedral_angle_4_deg16.843
r_dihedral_angle_3_deg16.162
r_dihedral_angle_1_deg5.479
r_scangle_it5.267
r_scbond_it3.273
r_mcangle_it1.85
r_angle_refined_deg1.611
r_mcbond_it1.008
r_symmetry_vdw_refined0.399
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.998
r_dihedral_angle_4_deg16.843
r_dihedral_angle_3_deg16.162
r_dihedral_angle_1_deg5.479
r_scangle_it5.267
r_scbond_it3.273
r_mcangle_it1.85
r_angle_refined_deg1.611
r_mcbond_it1.008
r_symmetry_vdw_refined0.399
r_symmetry_hbond_refined0.334
r_nbtor_refined0.307
r_nbd_refined0.251
r_xyhbond_nbd_refined0.207
r_chiral_restr0.133
r_metal_ion_refined0.033
r_bond_refined_d0.018
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4222
Nucleic Acid Atoms
Solvent Atoms713
Heterogen Atoms22

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction