3FO2

Crystal structure of hapten complex of catalytic elimination antibody 13G5 (Glu(L39)Gln mutant)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.529825% PEG 3350, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1141.62

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 83.116α = 90
b = 86.22β = 90
c = 113.643γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDADJUSTABLE FOCUSING MIRRORS IN K-B GEOMETRY2006-10-11MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 23-ID-D0.9793APS23-ID-D

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.185091.80.09315.93.239309-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.182.2587.80.6132.23.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 2GJZ2.1831.2737589199491.890.204040.20140.25583RANDOM43.444
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.030.14-0.17
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.324
r_dihedral_angle_4_deg16.337
r_dihedral_angle_3_deg16.063
r_dihedral_angle_1_deg6.84
r_scangle_it3.486
r_scbond_it2.694
r_angle_refined_deg1.527
r_mcbond_it1.461
r_mcangle_it1.249
r_angle_other_deg0.867
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.324
r_dihedral_angle_4_deg16.337
r_dihedral_angle_3_deg16.063
r_dihedral_angle_1_deg6.84
r_scangle_it3.486
r_scbond_it2.694
r_angle_refined_deg1.527
r_mcbond_it1.461
r_mcangle_it1.249
r_angle_other_deg0.867
r_symmetry_hbond_refined0.283
r_symmetry_vdw_refined0.24
r_symmetry_vdw_other0.222
r_nbd_other0.204
r_nbd_refined0.192
r_nbtor_refined0.182
r_mcbond_other0.157
r_xyhbond_nbd_refined0.141
r_nbtor_other0.092
r_chiral_restr0.085
r_bond_refined_d0.014
r_bond_other_d0.008
r_gen_planes_refined0.005
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6538
Nucleic Acid Atoms
Solvent Atoms162
Heterogen Atoms38

Software

Software
Software NamePurpose
MAR345data collection
PHASERphasing
REFMACrefinement
HKL-2000data reduction
HKL-2000data scaling